Enzymatically Driven Remodeling of Growth Kinetics and Internal Structure in Biomolecular Condensates

Living cells exhibit a complex organization comprising numerous compartments, among which are RNA- and protein-rich membraneless, liquidlike organelles known as biomolecular condensates. Energy-consuming processes regulate their formation and dissolution, with (de)phosphorylation by specific enzymes being among the most commonly involved reactions. By employing a model system consisting of a phosphorylatable peptide and homopolymeric RNA, and thanks to time-resolved ultra-small-angle x-ray scattering enabling us to probe a wide range of length and time scales, we elucidate how enzymatic activity remodels the growth kinetics and the internal structure of biomolecular condensates. Under a passive condition, we reveal a nucleation-driven coalescence mechanism maintained over four decades in time, similar to the coarsening of simple binary fluid mixtures. Coarse-grained molecular-dynamics simulations show that peptide-decorated RNA chains assembled immediately after mixing constitute the basic subunits. In contrast, actively formed condensates initially display a networklike internal structure, which gradually matures upon dephosphorylation prior to coalescence. Both pathways lead to a steady state, but fluorescence recovery after photobleaching indicates a peptide diffusivity that is twice as high in actively formed condensates consistent with their loosely packed internal structure. This study contributes to linking effectively cellular active processes such as post-translational modifications to the formation and dissolution pathways of membraneless organelles, impacting other fields including synthetic biology.